Winogradsky column lab page!


File:Icons-flag-uk.png
Welcome to the Winogradsky column lab page! Students from the Departments of Biological Applications and Technology, University of Ioannina and Icthyology and Aquatic Environment, University of Thessaly, Greece and the Microbiology course, Faculty of Sciences, University of Cádiz, Spain, discuss their findings on Winogradsky columns they constructed!

If you want to add a post, please feel free to contact the blog administrators (Hera Karayanni, Sokratis Papaspyrou or Kostas Kormas)!



Καλωσορίσατε στη σελίδα των Winobloggers! Διαδικτυακός τόπος συνάντησης φοιτητών, φοιτητριών και διδασκόντων δύο Τμημάτων από την Ελλάδα: Tμήμα Βιολογικών Εφαρμογών και Τεχνολογιών, Παν/μιο Ιωαννίνων και Τμήμα Γεωπονίας, Ιχθυολογίας και Υδάτινου Περιβάλλοντος, Παν/μιο Θεσσαλίας και ενός από την Ισπανία: Σχολή Θετικών Επιστημών, Πανεπιστήμιο του Cadiz. Παρακολουθούμε, σχολιάζουμε, ρωτάμε, απαντάμε σχετικά με τα πειράματά μας, τις στήλες Winogradsky!


Bienvenidos a la pagina web de los Winobloggers! Aquí los estudiantes y profesores de dos departamentos griegos, el Departamento de Aplicaciones y Tecnologías Biológicas de la Universidad de Ioannina y el Departmento de Agricultura, Ictiología y Sistemas Acuáticos de la Universidad de Thessalia, junto con los estudiantes de Microbiología de la Facultad de Ciencias en la Universidad de Cádiz, se reúnen para observar, comentar, preguntar y responder a preguntas relacionadas con nuestro experimento, la columna Winogradsky.


Winogradksy columns

Winogradksy columns
'In the field of observation, chance only favors the prepared mind' Pasteur 1854

Blog posts

Saturday, 9 June 2018

UCA_A1, A2: results


Our column was saturated with a lot of nutrients that may have done a bad effect on some microorganisms. We have thought the hypothesis that these microorganism can´t grow because of this saturation that have made microorganisms produce second metabolites which have changed pH's environment and maybe that is the reason why some microorganisms died. Also, de high concentration of glucose inhibited some reactions that could be necessary to the microorganisms. On the other hand, microorganisms that were able to live in this condition are the ones which we mentioned in the last post. These are anaerobe microorganisms who produce sulfhydryl acid which precipitates as iron sulphide II (black) and the acid mentioned is the bubble we see on the top.


On the other hand, the column A1 presents the variety of microorganism that we expect. We have to differentiate two zones, the anaerobic and the aerobic:

In the aerobic zone we can see many different types of colonies. These microorganisms usually inhabit in aquatic zone as we can relate in the photos. If they are phototroph they should have a Green coloration, that´s because they have chlorophyll pigments in their chloroplasts. As we can relate in the picture our Winograd sky column also present purple/Brown colonies of phototrophic bacteria’s, they have that colour because they don´t present any chlorophyll pigments.


In the anaerobic zone we discover the presence of sulphate reductors, that kind of microorganism have black pigmentation and are named chemotrophic. We can´t see any other relevant colonies, our theory is that the capacity of reproduction in that organism is better than the others one.

In conclusion the theories that we propose on the first days of class, was not confirmed. We talk about the presence of lactic oxidators but instead we can only observe the most habitual microorganism.




Apart from that we we´re observing the increase of many microorganism likewise we also see the difference between the strata that appears in the column and how they distribute making a microecosystem.

UCA_C3,C4_day90

Few changes have been observed.
-C4
Under strictly anaerobic conditions after a few weeks, and using the load of cellulose provided by the remains of paper incorporated in the sediment as the primary source for its metabolism, appear the bacteria of the genus Clostridium,and that's why an orange color is appreciated.





C3
-Sulfur-reducing bacteria are displayed as a deep black layer and are represented by Desulfovibrio, using sulfate to produce SH2, which will react with any iron present in the sediment, producing ferrous sulfide, which gives color Black. 

Friday, 8 June 2018

UCA_7B,8B_1: Day 89

Winogradsky column- Day 89

Group 7B (Lucas Garín Ortega and Alba Mejías Gallardo)
Group 8B (Laura Lucena del Amo and Noelia Moares Fernández)


The last time we visited our columns, the one made by group 8B, wich was kept in the light, had the following microorganisms:

·        At the bottom of the column, there was a black layer wich means that there are anaerobic microorganisms that breath with sulphate. The bubbles in thar área, are from H2S, and they are dur to thet breathing.
·        Also, there was a few orange layers wich means that photoeterooganotrophs had been proliferated.

The main diference between the last time we visited our column and this is that there are more orange layers and they are bigger.


After a few weeks we visited our column, the one made by group 7B, for the last time and observed the following:
·   The water that remains on the surface is still clear, so aerobic microorganisms
    have not proliferated

·   The clear layer previously found in the middle of our column has decreased.
    The bottom of the column has become a lighter color, and around this change,
    numerous cracks are found due to gases. These are due to the respiration of the
    microorganisms that are proliferating.

·   Finally, the orange layer appreciated on the surface has increased.



Thursday, 7 June 2018

UCA_A4_A3_day85

-COLUMN THAT WAS IN THE DARK:
We can see that all the column is darker, this is because have increased the number of anaerobic microorganisms, since they have carried out a respiration with sulphate, releasing H2S, which precipitates with iron, producing a black FeS compound.
Also, previously we had a gas bubble in the middle of the column, and now we haven´t it, this may be due to the weight of the land has elevated it to the top of the column. •

-COLUMN THAT WAS IN THE LIGHT:
In this case, the column has more than one colour, the column has more than one colour, we can see that there are areas that predominate the black colour by the same phenomenon that we explained before, due to the precipitation of FeS produced by the anaerobic respiration of some microorganisms. 
There are small areas of the column that have an orange colour, produced by photoheteroorganotrophic microorganisms such as Rhodospirillum. 
Finally, comment that there is a small gas bubble, this can be methane, carbon dioxide or even sulfuric acid. 

UCA_C5_C6_C7 day 90



C6: Ana Valdivia Aceituno, Curro Polo Castellano y Sergio Valiente Vélez.

C5: David Ruiz Romero y Carlos Pinto Perea.

C7: Noemí Toro Barrios, Nerea Rojas Sanz, Jose Manuel Pozo Suárez.

Hi everyone!

Here we are going to compare de progress of our Winogradsky columns from the day 44 till the day 94 after beginning this experiment. As we can see, the columns have suffered too many changes. The matter that we agree at the beginning has already been consumed.

Figures 2: 90 days
Figures 1: 40 days
C6: 0,25 g paper +0,25g CaSO4 + Sun light

C6 column has experimented a differentiation of the organization of microorganism with the pass of the time:

On top, from 40 days till today: we can find a green colour that indicates the presence of cyanobacteria; they need to be in the surface to catch gasses like O2 because they perform oxygenic photosynthesis. This colour can also indicate the presence of algae.

Bellow this, we can see an orange colour that indicates the presence of photoheteroorganotrophs organisms (for example: Rhodospirillum). They use sunlight as a principal source of energy and organic matter from outside as a source of carbon.

This organic matter should come from cyanobacteria of above because they produce secondary metabolites that are sent out when they don’t need them anymore.

Below the orange area of the column, a dark region is placed. Its black and grey colours are due to the existence of anaerobial breath which produces a precipitate of FeS or Fe.
There are also some gas bubbles whose composition can be methane, carbon dioxide or hydrogen sulphide.

The pink region of the column, which is placed under the grey and black one, is probably where Chromatium are placed. As we can compare, this region is bigger whit the time.

Finally, in the very bottom of the column there is a dark green region associated to Chlorobium as they are green bacteria which are anaerobial and phototrophs.

Now, let’s talk about C5 column: The column is still dark on the 20 of April.
Figure 1:40 days
On the one hand, one face of the column is less dark than the other face because it has been exposed to the sun.

On the other hand, in the centre we can see a brown spot that maybe due to pollution. Eventually, there is water in the top.

Along the column it can be observe the presence of purple sulphur bacteria, anaerobic photoautotroph anoxygenic organisms that live at the bottom of the column.

It can also remake the fact that all the initial glucose has been converted to hydrogen sulphide.

Then, on June 1 our Winogradsky column hasn’t changed.
Figure 2:90 days
The dark area covers practically the entire column. This black zone is compound of anaerobic respiration with sulphate, producing hydrogen sulphide which precipitates iron with abiotic form as black iron sulphide.
One side of the column is less dark than the other because it has been exposed to the sun.

Continuing with the observation, in the centre we can see brown spots that may be due to contamination. Sometimes, there is water in the upper part of the column and dry remains of gases that have emanated from the surface liquid (methane, hydrogen sulphide, carbon dioxide ...).

Throughout the column, the presence of purple sulphur bacteria can be observed; anoxygenic photoautotrophic organisms (of the Chromatium type) that live in the lower part of the column. It may also be because all the initial glucose has been converted to hydrogen sulphide.

By the end, the column C7 has been changing a lot throughout these days:

Figure 1: 40 days
Figure 2: 90 days
 First; it shows a brown colour. Some crevices can be seen in the sediment, as well as, dark grey spots. These crevices may show up because of gas production such as CO2, CH4, H2S... Furthermore, orange spots can be seen too, which indicate the presence of photoautotrophic organisms.

It has divided in two parts: a lighter one and a darker one. It must be because the sunlight only lights up in the lighter one. So, we think that in the lighter one there will be more photoautotrophic organisms while in the other will be more chemoautotrophic organisms. The darker one should be formed by organisms that reduces sulphur because the colour black indicates us that it contains sulphur.

UCA_5A_6A_7A: Day 88 Finishing the project

Hi everyone,

This should be our last report about our Winogradsky Columns. As you will see now, the three columns have remarkable changes since we put our last entry.

Evolution of Winogradsky Columns

Group 5A: The red part that was observed in our second entry has moved, and now, it takes a place in the solid part. Now, we found two different zones with two different colors. In the red zone, we can find bacterias that affix nitrogen and in the black zone, bacterias that affix sulfur. Both are anaerobic, however, for those bacterias who affix nitrogen, the toxicity that is caused by O2 is less dangerous. All in all, we conclude what we already thought before, our entire column is anaerobic, but there are two tonalities, which is not what we used to think, since our conclusion was that there would only be one color.
Winogradsky Column 5A group:



 
Group 6A: After three months we see that the column has change a lot, being almost black except in the lower part, that is due to the precipitation of elemental sulfur as a result of the metabolism of the sulfur bacteria that oxidize the H2S to S. Also there are many points which are bubbles of H2S. The black zone is produced by anaerobic breath with sulfate, that produce H2S which precipitate with Fe producing FeS.

Winogradsky Column 6A group:




Group 7A: Our column has changed a lot during this time. First of all, we have seen the appearance of algae and cyanobacteria. This match with our column, because we left it in a light environment. Also, we have noticed that the orange colour in the middle part has increased, this is produced by photoheteroorganotrophic bacteria. We had black colour in the bottom of our column, but in this case it has extended through the column, but it stops in the middle part. This colour is produced because anaerobic respiration with sulfate was produced. Anaerobic bacteria produce hydrogen sulfide (H2S), that with the Fe, they precipitate in a abiotic way creating FeS. This compound makes the black colour in the column. Finally, we still have gas bubbles through the column, probably CO2 and H2S.

Winogradsky Column 7A group:





After all, we have seen the evolution that a Winogradsky Column may have through a period of time. However, it may increase or appear other organism through the column during this time.
I hope everyone enjoy our entry as we enjoyed doing it. 
 
Thanks everyone and keep follow the activity of this amazing blog.

UCA_5B, 6B_1: day 86

After having spent roughly one month in the light, our two columns present highly different characteristics, due to the dissimilar microorganisms that have grown in each one. In order to comprehend the transition from two months of darkness (in both columns) to the light, we'll try to cover their evolution from the very beginning.


4 g sugar column's evolution. The transition from dark to light happened in the last photo.

Control column's evolution. The transition from dark to light happened in the last photo.

At first, in the column containing 4 grams of sugar (and considering it was kept in the dark), chemoheterotrophic were extremely favoured (at first glance, one might think that the osmotic shock would make it impossible for any microorganisms to survive; however, this doesn't seem to be the case, since the last time we checked our column white-yellowish elementary sulfur had appeared, so there had to be some kind of bacteria producing it; we’ll come back to that later).

What the light did to our sugar column.


Despite not being able to see a colour change in the sugar column (owing to the lack of pigments in this kind of microorganisms), we know for a fact that they, indeed, were able to grow: there were huge emissions of gases (be it CO2, H2S or CH4), and this pushed the contents out of the column (along with the water). This could be the action of anaerobic and facultative anaerobic microorganisms (and definitely also organisms performing both aerobic and anaerobic respiration), so it's reasonable to think they could have grown all over the column (perhaps a bit more towards the bottom-center, where the column has been fractured likely due to the gas emission, so considering the oxygen gradient, this was probably the action of facultative anaerobic bacteria). Also, because of fermentation processes, organic acids must have been produced; and it's a possibility that these were used by our next group of anaerobic chemoheterotrophic bacteria (and they might have used the sugar as well).


We could also find FeS precipitates, indicating the presence of sulfate-reducing bacteria that reduce the SO4(2-) (that was obtained from the sulfur source, CaSO4 in our case) to H2S, which then reacted with the iron present in the sediment thus forming iron (II) sulfide. The fact that black sediments could also be seen at the top of the column (and at the bottom, too) seems to reinforce the idea that large quantities of gasses have pushed the column to the top). This didn't happen in our control column, where a black colour was observed only at the bottom, as one would expect due to the anaerobic nature of these microorganisms.



Side by side comparison after 1 month of light.



After we placed both columns in the light, we noticed a very interesting difference between the control and the sugar columns: large quantities of elemental sulfur (which has a yellowish, white tone) were found in the sugar one. We know there are two kinds of sulfur bacteria that can use H2S as a electron donor during anoxygenic photosynthesis: purple bacteria (think Chromatium) and green bacteria (for instance, Chlorobium). Nevertheless, the first one oxidizes H2S to S intracellularly (storing it in cell structures); while the other one produces extracellular sulfur, which is the one which's colour we can observe. Our problem here is that no green hue was to be found (it could have been masked? Maybe the bacteria died after producing sulfur? In theory, it should have been easier for photosynthetic organisms to grow in the sugar column, as the gas emissions produced by chemotrophs would have been used by them). Despite this, it makes sense that the elemental sulfur appeared at the bottom, as this is where H2S concentration is the highest. Yet, we still found something that might have been seen out of place at first: a crystal-like substance at the very top of the column. We think this is none other than sulfur that has made its way out of the column from the bottom propelled by gas emissions.


Sulfur microcrystals?

What happened to the control column the time it spent in the light?

Moreover, we couldn't find cyanobacteria in either column; this makes sense, especially considering that there was no water left in the sugar column (and almost none in the control one), a very important compound for this oxygenic autotrophic bacterium to grow (it's used as an electron donor during light-dependent reactions).


Lastly, photoheterotrophic bacteria (like Rhodospirillum) were found in both columns near the top, judging by the orange colour we observed. It seems they were able to grow more in the control column.



To conclude, if the white compound we found is indeed sulfur, this would support our last hypothesis (photosynthetic bacteria would find it easier to grow in the sugar column), as it indicates the presence of phototrophic bacteria that oxidize H2S.




Tuesday, 5 June 2018

Day 45.  UCA. Rio San Pedro sedimentWinogradsky columns C2 and C3.

Today, 5th of June many different types of mycroorganisms can be seen inside the columns. Those mycroorganism has been living and multiplying since March in two different life conditions:

-In an illuminated environment, we can see many dark stains with a colour between blue and grey in the bottom of the column. Those stains are formed by anaerobic bacteria that breathe with H2S.
In the middle of the column, an orange stain can be seen. This stain is formed by Rhodospirillum, photohertroorganotrophic organisms.
Finally on the surface of the column we can see many green stains, that are cianobacteria and algae.

- In a dark environment, we can see in almost all the column a really big stain with a dark colour between grey and blue. This stain is formed by anaerobic bacteria that breathe with H2S bacteria. On this stain, we can see some orange stains, that are formed by Rhodospirillum, photohertroorganotrophic organisms bacteria.

According with those results, we can declare that in those different life conditions, we can see the same type of mycrooorganisms in both colums, except, that we cannot see photoautotrophic mycroorganism in the dark enviroment, because those mycroorganisms need light energy to live.

Light environment
Dark environment

Winogradsky Column. Day 45. UCA B1-B2

After almost 50 days since the last time we checked the columns we can see several changes in their composition.
We´ll be talking about the column B1 because the other column got lost at some point along these days.
as we can appreciate, the changes are noticiables:
  • there are plenty of places with orange coloration (due to photoheterotrophic microorganism)
  • darker areas mainly at the bottom part (because of the action of sulfate anaerobic breathers)
  • olive green zones due to anoxigenic microorganism.

Thursday, 24 May 2018

UCA_4B_3B_day85  

San Pedro's River sediment + 0.3 g paper + 0.1 g CaSO4


Group 3B: Alvaro Lucero Garófano and José Luis Hernández Fernández.
Group 4B: Paula Gilabert Prieto and Pilar Grosso Rodríguez.

We have bad news for you, today is our last post.... :(

Our column has been changing during these days since the last time we saw them and we posted it.

The changes produced are:

Column in contact with light:

We can appreciate a change of color from brown to orange. That color manifestate the appearance of the bacteria Rhodospirillum which is photosynthetic
On the other side, we can see some green spots which we think they are algae. Also in this part we can appreciate some black spots at the bottom, which means that are anaerobic organisms.

Column without light contact: 
The only change that we can see, is that the difference bettween anaerobic and aerobic is more defined.